Variant report

Variant	rs10465478
Chromosome Location	chr1:185883745-185883746
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10465499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239587	1.00[EUR][1000 genomes]
rs1322354	1.00[EUR][1000 genomes]
rs1322355	1.00[EUR][1000 genomes]
rs1322356	1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824645	1.00[EUR][1000 genomes]
rs16824657	1.00[EUR][1000 genomes]
rs16824658	1.00[EUR][1000 genomes]
rs16824663	1.00[EUR][1000 genomes]
rs16824665	1.00[EUR][1000 genomes]
rs16824668	1.00[EUR][1000 genomes]
rs16824669	1.00[EUR][1000 genomes]
rs16824673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824678	1.00[EUR][1000 genomes]
rs16824688	1.00[EUR][1000 genomes]
rs16824692	1.00[EUR][1000 genomes]
rs16824719	1.00[EUR][1000 genomes]
rs16824725	1.00[EUR][1000 genomes]
rs16824726	1.00[EUR][1000 genomes]
rs16824728	1.00[EUR][1000 genomes]
rs16824729	1.00[EUR][1000 genomes]
rs16824732	1.00[EUR][1000 genomes]
rs16824744	1.00[EUR][1000 genomes]
rs1951512	1.00[EUR][1000 genomes]
rs1951513	1.00[EUR][1000 genomes]
rs1951515	1.00[EUR][1000 genomes]
rs1951516	1.00[EUR][1000 genomes]
rs41533044	1.00[EUR][1000 genomes]
rs55678382	1.00[EUR][1000 genomes]
rs55975103	1.00[EUR][1000 genomes]
rs56182901	1.00[EUR][1000 genomes]
rs57103984	1.00[EUR][1000 genomes]
rs57289095	1.00[EUR][1000 genomes]
rs57454743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58063730	1.00[EUR][1000 genomes]
rs58437418	1.00[EUR][1000 genomes]
rs59787112	1.00[EUR][1000 genomes]
rs61261990	1.00[EUR][1000 genomes]
rs6425008	1.00[EUR][1000 genomes]
rs6664313	1.00[EUR][1000 genomes]
rs6664384	1.00[EUR][1000 genomes]
rs6666206	1.00[EUR][1000 genomes]
rs6666950	1.00[EUR][1000 genomes]
rs6667046	1.00[EUR][1000 genomes]
rs6679622	1.00[EUR][1000 genomes]
rs6679893	1.00[EUR][1000 genomes]
rs6689494	1.00[EUR][1000 genomes]
rs6689783	1.00[EUR][1000 genomes]
rs6690968	1.00[EUR][1000 genomes]
rs6701167	1.00[EUR][1000 genomes]
rs6703739	1.00[EUR][1000 genomes]
rs73054454	1.00[EUR][1000 genomes]
rs73054465	1.00[EUR][1000 genomes]
rs73056300	1.00[EUR][1000 genomes]
rs73058203	1.00[EUR][1000 genomes]
rs73058206	1.00[EUR][1000 genomes]
rs73058209	1.00[EUR][1000 genomes]
rs73058214	1.00[EUR][1000 genomes]
rs73058224	1.00[EUR][1000 genomes]
rs73058243	1.00[EUR][1000 genomes]
rs73058250	1.00[EUR][1000 genomes]
rs73062122	1.00[EUR][1000 genomes]
rs73062132	1.00[EUR][1000 genomes]
rs73062135	1.00[EUR][1000 genomes]
rs73062140	1.00[EUR][1000 genomes]
rs73062161	1.00[EUR][1000 genomes]
rs73062166	1.00[EUR][1000 genomes]
rs74134212	1.00[EUR][1000 genomes]
rs744737	1.00[EUR][1000 genomes]
rs7518783	1.00[EUR][1000 genomes]
rs7544887	1.00[EUR][1000 genomes]
rs9628634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185875600-185895800	Weak transcription	NHDF-Ad	bronchial
2	chr1:185877000-185894200	Weak transcription	Fetal Lung	lung
3	chr1:185877800-185904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:185880600-185884200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:185880600-185884400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:185881600-185898800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:185882000-185884400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:185882000-185894800	Weak transcription	Aorta	Aorta
9	chr1:185882200-185884800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:185883000-185907800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:185883200-185907400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:185883600-185885600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:185883600-185886800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:185883600-185906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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