Variant report

Variant	rs16824726
Chromosome Location	chr1:185876692-185876693
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10465478	1.00[EUR][1000 genomes]
rs10465499	1.00[EUR][1000 genomes]
rs12239587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1322354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322355	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1322356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824645	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824657	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824663	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824668	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824669	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824673	1.00[EUR][1000 genomes]
rs16824678	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824688	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824692	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824719	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824725	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824728	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824729	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41533044	1.00[EUR][1000 genomes]
rs55678382	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55943726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55975103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182901	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57103984	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57289095	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57454743	1.00[EUR][1000 genomes]
rs58063730	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58437418	1.00[EUR][1000 genomes]
rs59787112	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59818099	0.93[AMR][1000 genomes]
rs61261990	1.00[EUR][1000 genomes]
rs6425008	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664313	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664384	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6666206	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6666950	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6667046	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679622	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679893	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6689494	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6689783	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6690968	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6701167	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6703739	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73054454	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054465	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056300	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058203	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058206	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058209	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058214	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058224	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058243	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058250	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062125	0.89[AFR][1000 genomes]
rs73062132	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062135	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062140	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062143	1.00[AMR][1000 genomes]
rs73062161	1.00[EUR][1000 genomes]
rs73062166	1.00[EUR][1000 genomes]
rs74134212	1.00[EUR][1000 genomes]
rs744737	1.00[EUR][1000 genomes]
rs7518783	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544887	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9628634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185868000-185878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185872800-185878400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:185873000-185878400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:185873200-185878200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:185873200-185878200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:185873200-185880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:185873400-185881200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:185875600-185895800	Weak transcription	NHDF-Ad	bronchial
9	chr1:185876400-185876800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:185876600-185876800	Enhancers	HUES6 Cell Line	embryonic stem cell

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