Variant report
| Variant | rs59818099 |
|---|---|
| Chromosome Location | chr1:185862005-185862006 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:185851699..185853800-chr1:185861286..185863509,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12239587 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs12239922 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs12239929 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs1322354 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs1322356 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs16824658 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs16824665 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs16824726 | 0.93[AMR][1000 genomes] |
| rs16824728 | 0.93[AMR][1000 genomes] |
| rs16824732 | 0.93[AMR][1000 genomes] |
| rs16824736 | 0.93[AMR][1000 genomes] |
| rs16824741 | 0.93[AMR][1000 genomes] |
| rs16824744 | 0.93[AMR][1000 genomes] |
| rs1951512 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs1951513 | 0.93[AMR][1000 genomes] |
| rs1951515 | 0.93[AMR][1000 genomes] |
| rs55678382 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs55943726 | 0.93[AMR][1000 genomes] |
| rs55975103 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs56182901 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs58063730 | 0.93[AMR][1000 genomes] |
| rs6425008 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs6664313 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs73054454 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs73054465 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs73062122 | 0.93[AMR][1000 genomes] |
| rs73062132 | 0.93[AMR][1000 genomes] |
| rs73062134 | 0.93[AMR][1000 genomes] |
| rs73062135 | 0.93[AMR][1000 genomes] |
| rs73062143 | 0.93[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv548398 | chr1:185136458-186003094 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 69 gene(s) | inside rSNPs | diseases |
| 2 | esv3424090 | chr1:185679718-186270877 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:185850400-185863400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr1:185862000-185862800 | Active TSS | K562 | blood |
