Variant report

Variant	rs6689228
Chromosome Location	chr1:185841299-185841300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185831415..185833805-chr1:185840842..185844622,3	K562	blood:
2	chr1:185838873..185840389-chr1:185840488..185842530,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10489716	1.00[EUR][1000 genomes]
rs12079734	1.00[EUR][1000 genomes]
rs12239000	0.87[YRI][hapmap]
rs12239002	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap]
rs1407428	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16824455	1.00[EUR][1000 genomes]
rs16824458	1.00[EUR][1000 genomes]
rs16824465	1.00[MEX][hapmap]
rs16824488	1.00[EUR][1000 genomes]
rs16824497	1.00[EUR][1000 genomes]
rs1830622	1.00[EUR][1000 genomes]
rs1830623	1.00[EUR][1000 genomes]
rs1853247	1.00[EUR][1000 genomes]
rs2170858	1.00[EUR][1000 genomes]
rs28477118	1.00[EUR][1000 genomes]
rs28510615	1.00[EUR][1000 genomes]
rs28885369	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55731570	1.00[EUR][1000 genomes]
rs55887884	1.00[EUR][1000 genomes]
rs56100961	1.00[EUR][1000 genomes]
rs56331179	1.00[EUR][1000 genomes]
rs56347630	1.00[EUR][1000 genomes]
rs56881574	1.00[EUR][1000 genomes]
rs57036166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57107751	1.00[EUR][1000 genomes]
rs57162167	1.00[EUR][1000 genomes]
rs57215320	1.00[EUR][1000 genomes]
rs57246058	1.00[EUR][1000 genomes]
rs57257586	1.00[EUR][1000 genomes]
rs57646829	1.00[EUR][1000 genomes]
rs57782754	1.00[EUR][1000 genomes]
rs58433773	1.00[EUR][1000 genomes]
rs58610741	1.00[EUR][1000 genomes]
rs59175860	1.00[EUR][1000 genomes]
rs59660733	1.00[EUR][1000 genomes]
rs59967839	1.00[EUR][1000 genomes]
rs60308365	1.00[EUR][1000 genomes]
rs60458315	1.00[EUR][1000 genomes]
rs60735946	1.00[EUR][1000 genomes]
rs61679640	1.00[EUR][1000 genomes]
rs61689983	1.00[EUR][1000 genomes]
rs6425004	1.00[EUR][1000 genomes]
rs6425005	1.00[EUR][1000 genomes]
rs6425006	1.00[MEX][hapmap]
rs6657554	1.00[MEX][hapmap]
rs6662457	0.86[YRI][hapmap]
rs6671094	1.00[EUR][1000 genomes]
rs6675304	0.83[AFR][1000 genomes]
rs6675691	1.00[EUR][1000 genomes]
rs6676349	1.00[EUR][1000 genomes]
rs6676522	1.00[EUR][1000 genomes]
rs6677183	1.00[EUR][1000 genomes]
rs6688298	1.00[EUR][1000 genomes]
rs6689359	1.00[EUR][1000 genomes]
rs6690475	1.00[EUR][1000 genomes]
rs6690559	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6690714	1.00[EUR][1000 genomes]
rs6696804	1.00[MEX][hapmap]
rs6700856	1.00[EUR][1000 genomes]
rs6701921	0.88[YRI][hapmap]
rs6703750	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs73054432	1.00[EUR][1000 genomes]
rs73054442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060487	1.00[EUR][1000 genomes]
rs73062512	1.00[EUR][1000 genomes]
rs73062516	1.00[EUR][1000 genomes]
rs73070519	1.00[EUR][1000 genomes]
rs73070522	1.00[EUR][1000 genomes]
rs73070527	1.00[EUR][1000 genomes]
rs73070547	1.00[EUR][1000 genomes]
rs73070548	1.00[EUR][1000 genomes]
rs73070567	1.00[EUR][1000 genomes]
rs73070598	1.00[EUR][1000 genomes]
rs73072012	1.00[EUR][1000 genomes]
rs73072023	1.00[EUR][1000 genomes]
rs73072049	1.00[EUR][1000 genomes]
rs73072063	1.00[EUR][1000 genomes]
rs73072067	1.00[EUR][1000 genomes]
rs74134207	1.00[EUR][1000 genomes]
rs74134210	1.00[EUR][1000 genomes]
rs74134216	1.00[EUR][1000 genomes]
rs74134265	1.00[EUR][1000 genomes]
rs74134306	1.00[EUR][1000 genomes]
rs74134307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135337	1.00[EUR][1000 genomes]
rs74135346	1.00[EUR][1000 genomes]
rs74135350	1.00[EUR][1000 genomes]
rs74135351	1.00[EUR][1000 genomes]
rs74135359	1.00[EUR][1000 genomes]
rs74135362	1.00[EUR][1000 genomes]
rs74135365	1.00[EUR][1000 genomes]
rs7517811	1.00[EUR][1000 genomes]
rs7540727	1.00[EUR][1000 genomes]
rs7540773	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7544162	1.00[EUR][1000 genomes]
rs7544394	1.00[EUR][1000 genomes]
rs7544808	1.00[EUR][1000 genomes]
rs7554996	1.00[MEX][hapmap];0.83[YRI][hapmap]
rs959689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185834600-185848200	Weak transcription	Aorta	Aorta
3	chr1:185838800-185849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:185840200-185842000	Enhancers	Liver	Liver
5	chr1:185841000-185842000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:185841200-185841800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:185841200-185842200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:185841200-185844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links