Variant report

Variant	rs73060726
Chromosome Location	chr7:6386170-6386171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6379408..6381446-chr7:6384710..6386481,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10224877	1.00[AMR][1000 genomes]
rs12055988	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12056244	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349887	1.00[AMR][1000 genomes]
rs6957147	1.00[AMR][1000 genomes]
rs6957783	1.00[AMR][1000 genomes]
rs73060723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060727	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060728	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060729	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73060730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73060732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73060735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73060741	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73676739	1.00[AMR][1000 genomes]
rs7777861	1.00[AMR][1000 genomes]
rs7800977	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1025381	chr7:6356704-6409818	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv538716	chr7:6365534-6400845	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6357800-6386200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:6358200-6387200	Weak transcription	HepG2	liver
3	chr7:6358200-6387600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:6358200-6387600	Weak transcription	HSMM	muscle
5	chr7:6358200-6387600	Weak transcription	NH-A	brain
6	chr7:6362800-6387800	Weak transcription	Fetal Lung	lung
7	chr7:6363000-6386200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:6363000-6387600	Weak transcription	NHEK	skin
9	chr7:6363200-6386200	Weak transcription	Fetal Brain Male	brain
10	chr7:6367400-6386400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:6368400-6387800	Weak transcription	Colonic Mucosa	Colon
12	chr7:6368800-6387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:6370000-6387800	Weak transcription	Brain Substantia Nigra	brain
14	chr7:6370200-6387600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:6370200-6387600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:6370200-6387800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:6370400-6387200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:6370400-6387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:6370400-6387600	Weak transcription	Osteobl	bone
20	chr7:6370600-6386400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:6370600-6386400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:6370600-6387200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:6370600-6387200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:6370600-6387600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:6370600-6387600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:6370600-6387600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:6370600-6387600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:6370600-6387800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:6370800-6386200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:6370800-6386400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:6370800-6386400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:6370800-6386400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:6370800-6386400	Weak transcription	Esophagus	oesophagus
34	chr7:6370800-6387200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr7:6370800-6387200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:6370800-6387200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:6370800-6387200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:6370800-6387400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:6370800-6387600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:6370800-6387600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr7:6370800-6387800	Weak transcription	Liver	Liver
42	chr7:6370800-6387800	Weak transcription	HSMMtube	muscle
43	chr7:6370800-6387800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:6371000-6386400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:6371000-6387800	Weak transcription	Adipose Nuclei	Adipose
46	chr7:6372000-6387600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:6372000-6387600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:6372600-6387200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:6372800-6387200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:6373200-6387800	Weak transcription	NHDF-Ad	bronchial

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