Variant report

Variant	rs73061892
Chromosome Location	chr1:210760144-210760145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210547126..210548698-chr1:210757721..210760261,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10746431	0.87[EUR][1000 genomes]
rs60650082	1.00[EUR][1000 genomes]
rs6696688	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061893	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210752200-210761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210756200-210761000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
4	chr1:210757200-210761200	Weak transcription	HSMM	muscle
5	chr1:210758200-210760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210758200-210761000	Weak transcription	Gastric	stomach
7	chr1:210758400-210761000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:210758400-210761000	Weak transcription	Osteobl	bone
9	chr1:210758600-210763000	Weak transcription	A549	lung
10	chr1:210759200-210760800	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:210759400-210760200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:210759400-210761400	Enhancers	Fetal Brain Male	brain
13	chr1:210759600-210760200	Enhancers	Brain Germinal Matrix	brain
14	chr1:210759600-210760400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr1:210759600-210760600	Enhancers	Brain Angular Gyrus	brain
16	chr1:210759600-210761000	Enhancers	Brain Hippocampus Middle	brain
17	chr1:210759600-210761000	Enhancers	Brain Substantia Nigra	brain
18	chr1:210759600-210761200	Enhancers	Colon Smooth Muscle	Colon
19	chr1:210759800-210760400	Enhancers	Fetal Brain Female	brain
20	chr1:210759800-210761000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:210759800-210761200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:210760000-210760200	Enhancers	Fetal Heart	heart
23	chr1:210760000-210760200	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:210760000-210760400	Enhancers	Brain Anterior Caudate	brain
25	chr1:210760000-210761200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:210760000-210761400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:210760000-210761600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links