Variant report

Variant	rs73065807
Chromosome Location	chr1:196262454-196262455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10494742	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12402127	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12405050	0.82[EUR][1000 genomes]
rs12407399	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12409953	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12410633	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16839785	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56186308	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56199993	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60040626	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73063982	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73063989	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73063993	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73065818	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73065825	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73065828	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73065844	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73067629	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs74136510	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7513135	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7522690	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7529369	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7537176	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7554401	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196244600-196272400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:196249200-196281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:196250800-196271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:196251000-196271600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:196252200-196272200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:196253200-196271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:196256600-196302800	Weak transcription	Ovary	ovary
8	chr1:196258600-196267600	Weak transcription	Liver	Liver

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