Variant report

Variant	rs7522690
Chromosome Location	chr1:196331697-196331698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10494742	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12402127	0.88[EUR][1000 genomes]
rs12405050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12407399	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12409953	0.89[CEU][hapmap];0.95[YRI][hapmap]
rs12410633	0.89[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16839785	0.89[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56186308	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56199993	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs60040626	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73065807	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73065818	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73065825	0.88[EUR][1000 genomes]
rs73065828	0.88[EUR][1000 genomes]
rs73065844	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73067629	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74136510	0.88[EUR][1000 genomes]
rs7513135	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7529369	0.95[YRI][hapmap]
rs7537176	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs7554401	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv872953	chr1:196286639-196411281	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1826904	chr1:196291977-196371432	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv872954	chr1:196304863-196387809	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196303200-196332600	Weak transcription	Ovary	ovary
2	chr1:196327200-196333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:196327200-196342400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:196331200-196331800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:196331400-196331800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:196331400-196331800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:196331600-196333200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:196331600-196333400	Weak transcription	Liver	Liver

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