Variant report

Variant	rs73068542
Chromosome Location	chr2:209460360-209460361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209453371..209455588-chr2:209458893..209461604,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16824864	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841402	0.90[ASN][1000 genomes]
rs16841411	1.00[ASN][1000 genomes]
rs16841412	1.00[ASN][1000 genomes]
rs16841429	1.00[ASN][1000 genomes]
rs16841474	0.82[ASN][1000 genomes]
rs2364136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2364137	1.00[ASN][1000 genomes]
rs5028247	1.00[ASN][1000 genomes]
rs6707204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6722486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6726460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6761062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068517	1.00[ASN][1000 genomes]
rs73068518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068527	1.00[ASN][1000 genomes]
rs73068530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73068545	1.00[ASN][1000 genomes]
rs73068546	1.00[ASN][1000 genomes]
rs7557972	1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209458800-209460600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:209458800-209460600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:209459400-209460400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:209459400-209460600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:209459400-209461200	Enhancers	K562	blood
6	chr2:209459600-209460400	Enhancers	Colon Smooth Muscle	Colon
7	chr2:209459600-209460400	Enhancers	Fetal Intestine Small	intestine
8	chr2:209459600-209460600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr2:209459600-209461000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:209459800-209460400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr2:209459800-209461000	Enhancers	A549	lung
12	chr2:209460000-209460400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:209460000-209460600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:209460000-209460800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr2:209460000-209461000	Enhancers	Stomach Mucosa	stomach
16	chr2:209460200-209460600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:209460200-209460600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:209460200-209462400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links