Variant report
| Variant | rs16841474 |
|---|---|
| Chromosome Location | chr2:209472612-209472613 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209466529..209468922-chr2:209469771..209474091,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10172914 | 1.00[CHD][hapmap];0.92[GIH][hapmap] |
| rs10497902 | 0.83[CHD][hapmap] |
| rs16824864 | 0.82[ASN][1000 genomes] |
| rs16841231 | 0.83[CHD][hapmap] |
| rs16841233 | 0.83[CHD][hapmap] |
| rs16841242 | 0.83[CHD][hapmap] |
| rs16841402 | 0.82[ASN][1000 genomes] |
| rs16841411 | 0.82[ASN][1000 genomes] |
| rs16841412 | 0.82[ASN][1000 genomes] |
| rs16841429 | 0.82[ASN][1000 genomes] |
| rs2364136 | 0.82[ASN][1000 genomes] |
| rs2364137 | 0.82[ASN][1000 genomes] |
| rs5028247 | 0.82[ASN][1000 genomes] |
| rs6707204 | 0.82[ASN][1000 genomes] |
| rs6722486 | 0.82[ASN][1000 genomes] |
| rs6726460 | 0.82[ASN][1000 genomes] |
| rs6761062 | 0.82[ASN][1000 genomes] |
| rs73068517 | 0.82[ASN][1000 genomes] |
| rs73068518 | 0.82[ASN][1000 genomes] |
| rs73068520 | 0.82[ASN][1000 genomes] |
| rs73068524 | 0.82[ASN][1000 genomes] |
| rs73068527 | 0.82[ASN][1000 genomes] |
| rs73068530 | 0.82[ASN][1000 genomes] |
| rs73068533 | 0.82[ASN][1000 genomes] |
| rs73068534 | 0.82[ASN][1000 genomes] |
| rs73068537 | 0.82[ASN][1000 genomes] |
| rs73068541 | 0.82[ASN][1000 genomes] |
| rs73068542 | 0.82[ASN][1000 genomes] |
| rs73068544 | 0.82[ASN][1000 genomes] |
| rs73068545 | 0.82[ASN][1000 genomes] |
| rs73068546 | 0.82[ASN][1000 genomes] |
| rs7557972 | 0.82[ASN][1000 genomes] |
| rs962595 | 0.83[CHD][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005292 | chr2:209470753-209631662 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv2756959 | chr2:209472551-209551952 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv2759112 | chr2:209472551-209551952 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209469600-209473200 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr2:209472600-209473600 | Enhancers | K562 | blood |
