Variant report

Variant	rs73071842
Chromosome Location	chr2:210170703-210170704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73056330	0.88[AFR][1000 genomes]
rs73071826	0.84[AFR][1000 genomes]
rs73071829	0.84[AFR][1000 genomes]
rs73071840	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006506	chr2:210063871-210212039	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536134	chr2:210063871-210212039	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210164000-210172200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:210168400-210172200	Weak transcription	Right Atrium	heart
3	chr2:210169400-210170800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr2:210169600-210170800	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
5	chr2:210169800-210170800	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
6	chr2:210169800-210170800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:210169800-210170800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:210170000-210171000	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:210170000-210171000	Genic enhancers	H1 Cell Line	embryonic stem cell
10	chr2:210170400-210170800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:210170400-210170800	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:210170400-210170800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:210170400-210170800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:210170400-210170800	Enhancers	Fetal Muscle Trunk	muscle
15	chr2:210170400-210170800	Enhancers	Pancreas	Pancrea
16	chr2:210170600-210170800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:210170600-210170800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:210170600-210170800	Enhancers	Gastric	stomach
19	chr2:210170600-210171000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:210170600-210171000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

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