Variant report

Variant	rs73071829
Chromosome Location	chr2:210156559-210156560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs56658288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61083039	1.00[AMR][1000 genomes]
rs73056330	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056335	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73060287	1.00[AMR][1000 genomes]
rs73060288	1.00[AMR][1000 genomes]
rs73062103	1.00[AMR][1000 genomes]
rs73062108	1.00[AMR][1000 genomes]
rs73062118	1.00[AMR][1000 genomes]
rs73062183	1.00[AMR][1000 genomes]
rs73062184	1.00[AMR][1000 genomes]
rs73062186	1.00[AMR][1000 genomes]
rs73062187	1.00[AMR][1000 genomes]
rs73062190	1.00[AMR][1000 genomes]
rs73062191	1.00[AMR][1000 genomes]
rs73062194	1.00[AMR][1000 genomes]
rs73062195	1.00[AMR][1000 genomes]
rs73062200	1.00[AMR][1000 genomes]
rs73062201	1.00[AMR][1000 genomes]
rs73064203	1.00[AMR][1000 genomes]
rs73064208	1.00[AMR][1000 genomes]
rs73064210	1.00[AMR][1000 genomes]
rs73064215	1.00[AMR][1000 genomes]
rs73064219	1.00[AMR][1000 genomes]
rs73064221	1.00[AMR][1000 genomes]
rs73066235	1.00[AMR][1000 genomes]
rs73066247	1.00[AMR][1000 genomes]
rs73069097	1.00[AMR][1000 genomes]
rs73070298	1.00[AMR][1000 genomes]
rs73071823	0.84[AFR][1000 genomes]
rs73071826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071840	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071842	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006506	chr2:210063871-210212039	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536134	chr2:210063871-210212039	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210153800-210163400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:210154200-210163000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:210155800-210163400	Weak transcription	H9 Cell Line	embryonic stem cell

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