Variant report

Variant	rs73060288
Chromosome Location	chr2:209978820-209978821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56658288	1.00[AMR][1000 genomes]
rs57953296	1.00[AMR][1000 genomes]
rs73060287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062103	1.00[AMR][1000 genomes]
rs73062108	1.00[AMR][1000 genomes]
rs73062118	1.00[AMR][1000 genomes]
rs73062183	1.00[AMR][1000 genomes]
rs73062184	1.00[AMR][1000 genomes]
rs73062186	1.00[AMR][1000 genomes]
rs73062187	1.00[AMR][1000 genomes]
rs73062190	1.00[AMR][1000 genomes]
rs73062191	1.00[AMR][1000 genomes]
rs73062194	1.00[AMR][1000 genomes]
rs73062195	1.00[AMR][1000 genomes]
rs73062200	1.00[AMR][1000 genomes]
rs73062201	1.00[AMR][1000 genomes]
rs73064203	1.00[AMR][1000 genomes]
rs73064208	1.00[AMR][1000 genomes]
rs73064210	1.00[AMR][1000 genomes]
rs73064215	1.00[AMR][1000 genomes]
rs73064219	1.00[AMR][1000 genomes]
rs73064221	1.00[AMR][1000 genomes]
rs73066235	1.00[AMR][1000 genomes]
rs73066247	1.00[AMR][1000 genomes]
rs73070298	1.00[AMR][1000 genomes]
rs73071826	1.00[AMR][1000 genomes]
rs73071829	1.00[AMR][1000 genomes]
rs73071830	1.00[AMR][1000 genomes]
rs73071840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv584307	chr2:209966941-210024938	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209977200-209981200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:209977800-209979000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:209978200-209980800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:209978400-209982000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:209978600-209980400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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