Variant report

Variant	rs73062201
Chromosome Location	chr2:210059318-210059319
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs56658288	1.00[AMR][1000 genomes]
rs57953296	1.00[AMR][1000 genomes]
rs73056330	1.00[AMR][1000 genomes]
rs73056335	1.00[AMR][1000 genomes]
rs73060287	1.00[AMR][1000 genomes]
rs73060288	1.00[AMR][1000 genomes]
rs73062103	1.00[AMR][1000 genomes]
rs73062108	1.00[AMR][1000 genomes]
rs73062118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062187	1.00[AMR][1000 genomes]
rs73062190	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062200	1.00[AMR][1000 genomes]
rs73064203	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064210	1.00[AMR][1000 genomes]
rs73064215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064219	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064221	1.00[AMR][1000 genomes]
rs73066235	1.00[AMR][1000 genomes]
rs73066247	1.00[AMR][1000 genomes]
rs73070298	1.00[AMR][1000 genomes]
rs73071826	1.00[AMR][1000 genomes]
rs73071829	1.00[AMR][1000 genomes]
rs73071830	1.00[AMR][1000 genomes]
rs73071840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv460059	chr2:210058383-210215272	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv584308	chr2:210058383-210215272	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210056600-210065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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