Variant report

Variant	rs73073704
Chromosome Location	chr3:46605725-46605726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:41400333..41402576-chr3:46604913..46606433,2	MCF-7	breast:
2	chr17:41400384..41402129-chr3:46604913..46606433,2	K562	blood:
3	chr3:46526283..46528703-chr3:46605275..46607340,2	K562	blood:
4	chr3:46604527..46607242-chr3:46610810..46613336,2	K562	blood:

Variant related genes	Relation type
ENSG00000012223	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1829538	0.89[ASN][1000 genomes]
rs2280408	0.81[ASN][1000 genomes]
rs2280409	0.81[ASN][1000 genomes]
rs2280410	0.81[ASN][1000 genomes]
rs3806704	0.81[ASN][1000 genomes]
rs4312690	0.81[ASN][1000 genomes]
rs55957516	0.80[ASN][1000 genomes]
rs56048308	0.81[ASN][1000 genomes]
rs56394040	0.80[ASN][1000 genomes]
rs56695799	0.80[ASN][1000 genomes]
rs58177689	0.80[ASN][1000 genomes]
rs58572135	0.80[ASN][1000 genomes]
rs59673973	0.81[ASN][1000 genomes]
rs59836693	0.80[ASN][1000 genomes]
rs73069989	0.80[ASN][1000 genomes]
rs73069996	0.80[ASN][1000 genomes]
rs73069997	0.80[ASN][1000 genomes]
rs73071917	0.81[ASN][1000 genomes]
rs73071919	0.81[ASN][1000 genomes]
rs73071930	0.81[ASN][1000 genomes]
rs73071938	0.81[ASN][1000 genomes]
rs73072002	0.81[ASN][1000 genomes]
rs73075520	0.90[EUR][1000 genomes]
rs73075540	0.81[EUR][1000 genomes]
rs73075543	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46591800-46606600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46600400-46606600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:46600400-46607200	Weak transcription	Gastric	stomach
4	chr3:46600600-46606600	Weak transcription	Thymus	Thymus
5	chr3:46600600-46606800	Weak transcription	Ovary	ovary
6	chr3:46601000-46606400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:46601000-46606600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:46601200-46606000	Weak transcription	Primary T cells from cord blood	blood
9	chr3:46601200-46607200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:46602000-46606000	Enhancers	Left Ventricle	heart
11	chr3:46602000-46607000	Weak transcription	Liver	Liver
12	chr3:46602400-46606200	Weak transcription	Right Ventricle	heart
13	chr3:46602400-46607000	Weak transcription	Right Atrium	heart
14	chr3:46602800-46606200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:46603400-46606400	Enhancers	Fetal Heart	heart
16	chr3:46604000-46606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:46604000-46606600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:46604400-46606400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr3:46604600-46605800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:46604600-46605800	Enhancers	Psoas Muscle	Psoas
21	chr3:46604600-46607000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:46604800-46605800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:46604800-46606400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr3:46604800-46606800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:46604800-46607200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr3:46604800-46607200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:46604800-46607200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:46604800-46607200	Weak transcription	Lung	lung
29	chr3:46605000-46606400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:46605000-46607200	Weak transcription	Esophagus	oesophagus
31	chr3:46605200-46607000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:46605200-46607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr3:46605400-46606600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:46605400-46607000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:46605600-46605800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr3:46605600-46605800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr3:46605600-46605800	Active TSS	Spleen	Spleen
38	chr3:46605600-46606400	Enhancers	NHDF-Ad	bronchial

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