Variant report

Variant	rs73075519
Chromosome Location	chr3:46634431-46634432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs2280408	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280409	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280413	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2280414	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293021	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293023	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293024	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293025	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3189859	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3806704	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3827493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4312690	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55649212	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55693118	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55736632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55763532	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55923987	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55955974	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55957516	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008703	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56048308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56163098	0.81[AMR][1000 genomes]
rs56168669	0.81[AMR][1000 genomes]
rs56188400	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56197743	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56394040	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56398705	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56695799	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58177689	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58551379	0.81[AMR][1000 genomes]
rs58572135	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59673973	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59836693	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6442007	0.83[ASN][1000 genomes]
rs73069984	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73069987	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73069989	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069996	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069997	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071917	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73071919	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071938	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073732	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073734	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073742	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073744	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073745	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073746	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073752	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073753	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073754	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075515	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075524	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73075528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73075564	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73075571	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73077539	0.81[AMR][1000 genomes]
rs73077544	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46627200-46634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:46627200-46637000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
4	chr3:46632800-46634600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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