Variant report

Variant	rs73075890
Chromosome Location	chr1:212761274-212761275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212758746..212766071-chr1:212766312..212770844,12	K562	blood:
2	chr1:212752659..212754455-chr1:212760366..212761960,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11571524	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571533	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571535	1.00[AMR][1000 genomes]
rs11571558	1.00[AMR][1000 genomes]
rs3001261	1.00[AMR][1000 genomes]
rs58103452	1.00[AMR][1000 genomes]
rs58411510	1.00[AMR][1000 genomes]
rs58475088	1.00[AMR][1000 genomes]
rs60028272	1.00[AMR][1000 genomes]
rs61531628	1.00[AMR][1000 genomes]
rs73075893	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075901	1.00[AMR][1000 genomes]
rs73077743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077765	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077787	1.00[AMR][1000 genomes]
rs73077796	1.00[AMR][1000 genomes]
rs73077801	1.00[AMR][1000 genomes]
rs73079812	1.00[AMR][1000 genomes]
rs73079819	1.00[AMR][1000 genomes]
rs73079839	1.00[AMR][1000 genomes]
rs73079842	1.00[AMR][1000 genomes]
rs73079854	1.00[AMR][1000 genomes]
rs73079874	1.00[AMR][1000 genomes]
rs73079900	1.00[AMR][1000 genomes]
rs73081820	1.00[AMR][1000 genomes]
rs73081821	1.00[AMR][1000 genomes]
rs73081838	1.00[AMR][1000 genomes]
rs73081848	1.00[AMR][1000 genomes]
rs73081859	1.00[AMR][1000 genomes]
rs73081865	1.00[AMR][1000 genomes]
rs73081874	1.00[AMR][1000 genomes]
rs73081896	1.00[AMR][1000 genomes]
rs73083716	1.00[AMR][1000 genomes]
rs73083720	1.00[AMR][1000 genomes]
rs73083723	1.00[AMR][1000 genomes]
rs73088535	1.00[AMR][1000 genomes]
rs73088538	1.00[AMR][1000 genomes]
rs73088542	1.00[AMR][1000 genomes]
rs73088546	1.00[AMR][1000 genomes]
rs73090557	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	esv2757770	chr1:212648143-212843103	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
5	esv2758996	chr1:212648143-212843103	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
6	nsv428588	chr1:212705588-212862875	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212754000-212769200	Weak transcription	Spleen	Spleen
2	chr1:212755600-212762600	Enhancers	Placenta	Placenta
3	chr1:212757200-212766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:212759200-212761800	Enhancers	GM12878-XiMat	blood
5	chr1:212759600-212761400	Bivalent Enhancer	Osteobl	bone
6	chr1:212759800-212761600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:212760000-212761400	Enhancers	NH-A	brain
8	chr1:212760000-212761600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:212760200-212761400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:212760200-212761600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:212760200-212761800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:212760200-212762200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:212760800-212761400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:212760800-212761400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:212760800-212761600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:212760800-212761600	Bivalent Enhancer	K562	blood
17	chr1:212761000-212761600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:212761000-212761800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:212761000-212761800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:212761000-212761800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr1:212761200-212761600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:212761200-212761800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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