Variant report

Variant	rs61531628
Chromosome Location	chr1:212891769-212891770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212890618..212893441-chr1:212895011..212896992,2	K562	blood:
2	chr1:212872500..212873127-chr1:212891520..212892244,2	MCF-7	breast:
3	chr1:212838311..212839215-chr1:212891572..212892116,2	K562	blood:

Variant related genes	Relation type
ENSG00000237980	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11571524	1.00[AMR][1000 genomes]
rs11571533	1.00[AMR][1000 genomes]
rs11571535	1.00[AMR][1000 genomes]
rs11571558	1.00[AMR][1000 genomes]
rs41296720	0.93[AFR][1000 genomes]
rs41300021	0.93[AFR][1000 genomes]
rs41300031	0.93[AFR][1000 genomes]
rs41307644	0.81[AFR][1000 genomes]
rs56697362	1.00[AFR][1000 genomes]
rs57219112	0.93[AFR][1000 genomes]
rs57638446	0.87[AFR][1000 genomes]
rs58103452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59645180	1.00[AFR][1000 genomes]
rs60028272	1.00[AMR][1000 genomes]
rs61307999	0.81[AFR][1000 genomes]
rs73075730	1.00[AFR][1000 genomes]
rs73075736	1.00[AFR][1000 genomes]
rs73075738	1.00[AFR][1000 genomes]
rs73075782	0.93[AFR][1000 genomes]
rs73075890	1.00[AMR][1000 genomes]
rs73075893	1.00[AMR][1000 genomes]
rs73075901	1.00[AMR][1000 genomes]
rs73077743	1.00[AMR][1000 genomes]
rs73077745	1.00[AMR][1000 genomes]
rs73077750	1.00[AMR][1000 genomes]
rs73077752	1.00[AMR][1000 genomes]
rs73077765	1.00[AMR][1000 genomes]
rs73077787	1.00[AMR][1000 genomes]
rs73077796	1.00[AMR][1000 genomes]
rs73077801	1.00[AMR][1000 genomes]
rs73077863	0.93[AFR][1000 genomes]
rs73077871	0.93[AFR][1000 genomes]
rs73079812	1.00[AMR][1000 genomes]
rs73079819	1.00[AMR][1000 genomes]
rs73079839	1.00[AMR][1000 genomes]
rs73079842	1.00[AMR][1000 genomes]
rs73079854	1.00[AMR][1000 genomes]
rs73079874	1.00[AMR][1000 genomes]
rs73079880	0.88[AFR][1000 genomes]
rs73079886	0.88[AFR][1000 genomes]
rs73079887	0.88[AFR][1000 genomes]
rs73079900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079978	0.93[AFR][1000 genomes]
rs73079997	0.93[AFR][1000 genomes]
rs73080000	0.93[AFR][1000 genomes]
rs73081820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083787	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv549148	chr1:212876902-212962207	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212886400-212891800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:212886400-212894400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:212886600-212894400	Weak transcription	Osteobl	bone

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