Variant report

Variant	rs73077043
Chromosome Location	chr5:29828470-29828471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12651967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12656237	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12657245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12658382	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57353106	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074935	0.92[AFR][1000 genomes]
rs73077041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077048	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077049	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077055	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077059	1.00[AMR][1000 genomes]
rs73077061	1.00[AMR][1000 genomes]
rs73077062	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29827800-29832800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links