Variant report

Variant	rs73077400
Chromosome Location	chr2:212809973-212809974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16847762	1.00[AMR][1000 genomes]
rs16847781	1.00[AMR][1000 genomes]
rs16847782	1.00[AMR][1000 genomes]
rs56970655	0.88[AFR][1000 genomes]
rs57682664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58959264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60944259	1.00[AMR][1000 genomes]
rs73077372	1.00[AMR][1000 genomes]
rs73077389	0.80[AFR][1000 genomes]
rs73079309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079347	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987233	1.00[AMR][1000 genomes]
rs73987234	1.00[AMR][1000 genomes]
rs73987235	1.00[AMR][1000 genomes]
rs73987236	1.00[AMR][1000 genomes]
rs73987244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212806800-212816400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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