Variant report
| Variant | rs16847781 |
|---|---|
| Chromosome Location | chr2:213008025-213008026 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs13015590 | 1.00[YRI][hapmap] |
| rs16847650 | 1.00[YRI][hapmap] |
| rs16847653 | 1.00[YRI][hapmap] |
| rs16847657 | 1.00[YRI][hapmap] |
| rs16847714 | 1.00[YRI][hapmap] |
| rs16847732 | 1.00[YRI][hapmap] |
| rs16847752 | 1.00[YRI][hapmap] |
| rs16847762 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847767 | 1.00[YRI][hapmap] |
| rs16847769 | 1.00[YRI][hapmap] |
| rs16847773 | 1.00[YRI][hapmap] |
| rs16847776 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
| rs16847782 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847786 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs16847802 | 0.85[YRI][hapmap] |
| rs16847805 | 0.85[YRI][hapmap] |
| rs55760492 | 0.84[AFR][1000 genomes] |
| rs55960356 | 0.89[AFR][1000 genomes] |
| rs58176578 | 0.83[AFR][1000 genomes] |
| rs59383771 | 0.98[AFR][1000 genomes] |
| rs59942033 | 0.86[AFR][1000 genomes] |
| rs60944259 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73077400 | 1.00[AMR][1000 genomes] |
| rs73079309 | 1.00[AMR][1000 genomes] |
| rs73079315 | 1.00[AMR][1000 genomes] |
| rs73079345 | 1.00[AMR][1000 genomes] |
| rs73079347 | 1.00[AMR][1000 genomes] |
| rs73987233 | 1.00[AMR][1000 genomes] |
| rs73987234 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987235 | 1.00[AMR][1000 genomes] |
| rs73987236 | 1.00[AMR][1000 genomes] |
| rs73987242 | 0.98[AFR][1000 genomes] |
| rs73987243 | 0.98[AFR][1000 genomes] |
| rs73987244 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987245 | 0.98[AFR][1000 genomes] |
| rs73987246 | 0.98[AFR][1000 genomes] |
| rs73987247 | 0.98[AFR][1000 genomes] |
| rs73987248 | 1.00[AFR][1000 genomes] |
| rs73987249 | 1.00[AFR][1000 genomes] |
| rs73987250 | 0.98[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:213001400-213009400 | Weak transcription | Fetal Heart | heart |
| 2 | chr2:213003400-213009400 | Weak transcription | Fetal Intestine Small | intestine |
| 3 | chr2:213007400-213008600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
