Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13015590	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847650	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847653	0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847657	0.89[YRI][hapmap]
rs16847732	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847752	1.00[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs16847762	1.00[ASW][hapmap];0.82[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs16847767	1.00[YRI][hapmap]
rs16847769	1.00[YRI][hapmap]
rs16847773	1.00[YRI][hapmap]
rs16847776	1.00[YRI][hapmap]
rs16847781	1.00[YRI][hapmap]
rs16847786	0.82[YRI][hapmap]
rs16847802	0.82[YRI][hapmap]
rs16847805	0.82[YRI][hapmap]
rs57924179	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60944259	0.96[AFR][1000 genomes]
rs73987224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987225	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987231	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987234	0.96[AFR][1000 genomes]
rs73987235	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212971800-212973600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:212971800-212973600	Weak transcription	Aorta	Aorta
3	chr2:212972200-212973600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:212972200-212975400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:212972400-212973800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:212972600-212976000	Enhancers	HUVEC	blood vessel
7	chr2:212972800-212975800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:212973000-212976200	Enhancers	HUES48 Cell Line	embryonic stem cell

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