Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13015590	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847650	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847653	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847657	0.89[YRI][hapmap]
rs16847714	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847752	1.00[ASW][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs16847762	1.00[ASW][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs16847767	1.00[YRI][hapmap]
rs16847769	1.00[YRI][hapmap]
rs16847773	1.00[YRI][hapmap]
rs16847776	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs16847781	1.00[YRI][hapmap]
rs16847786	0.82[YRI][hapmap]
rs16847802	0.82[YRI][hapmap]
rs16847805	0.82[YRI][hapmap]
rs57924179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59383771	0.80[AFR][1000 genomes]
rs60944259	0.93[AFR][1000 genomes]
rs73987224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987226	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987234	0.93[AFR][1000 genomes]
rs73987235	0.91[AFR][1000 genomes]
rs73987250	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212972600-212976000	Enhancers	HUVEC	blood vessel
2	chr2:212973000-212976200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:212973600-212976000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:212973600-212976000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:212973600-212976000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:212973800-212976400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:212974000-212977800	Enhancers	Fetal Intestine Small	intestine
8	chr2:212974400-212978600	Weak transcription	Fetal Heart	heart
9	chr2:212974600-212976000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:212974600-212977600	Enhancers	Fetal Intestine Large	intestine
11	chr2:212975200-212976000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:212975200-212976200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:212975200-212981800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:212975200-212982200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:212975200-212982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:212975400-212976200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:212975400-212984800	Weak transcription	Aorta	Aorta
18	chr2:212975600-212982600	Weak transcription	Brain Substantia Nigra	brain

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