Variant report

Variant	rs16847773
Chromosome Location	chr2:212998708-212998709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13015590	0.88[YRI][hapmap]
rs16847650	0.89[YRI][hapmap]
rs16847653	0.89[YRI][hapmap]
rs16847657	0.89[YRI][hapmap]
rs16847714	1.00[YRI][hapmap]
rs16847732	1.00[YRI][hapmap]
rs16847752	1.00[YRI][hapmap]
rs16847762	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16847767	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16847769	1.00[YRI][hapmap]
rs16847776	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16847781	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16847782	0.96[AFR][1000 genomes]
rs16847786	0.82[YRI][hapmap]
rs16847802	0.82[YRI][hapmap]
rs16847805	0.82[YRI][hapmap]
rs16848213	1.00[CEU][hapmap]
rs2062932	1.00[CEU][hapmap]
rs55760492	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55960356	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59383771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942033	0.86[AFR][1000 genomes]
rs60944259	0.80[AFR][1000 genomes]
rs6717146	1.00[CEU][hapmap]
rs6737841	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987234	0.80[AFR][1000 genomes]
rs73987242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987243	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987244	0.96[AFR][1000 genomes]
rs73987245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570761	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links