Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16847762	0.96[AFR][1000 genomes]
rs16847776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16847781	0.98[AFR][1000 genomes]
rs16847782	0.98[AFR][1000 genomes]
rs16847786	0.81[AFR][1000 genomes]
rs55760492	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55960356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58176578	0.81[AFR][1000 genomes]
rs59383771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942033	0.84[AFR][1000 genomes]
rs6737841	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987244	0.98[AFR][1000 genomes]
rs73987245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213000400-213001200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:213000400-213001400	Enhancers	Fetal Heart	heart
3	chr2:213000400-213001400	Enhancers	Fetal Intestine Small	intestine
4	chr2:213000400-213001600	Enhancers	Fetal Intestine Large	intestine
5	chr2:213000600-213001400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:213000600-213001400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:213001000-213001200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr2:213001000-213001400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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