Variant report

Variant	rs59942033
Chromosome Location	chr2:213017180-213017181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16847762	0.88[AFR][1000 genomes]
rs16847776	0.88[AFR][1000 genomes]
rs16847781	0.86[AFR][1000 genomes]
rs16847782	0.86[AFR][1000 genomes]
rs16847786	0.85[AFR][1000 genomes]
rs55760492	0.86[AFR][1000 genomes]
rs55960356	0.80[AFR][1000 genomes]
rs58176578	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59383771	0.88[AFR][1000 genomes]
rs73987242	0.84[AFR][1000 genomes]
rs73987243	0.84[AFR][1000 genomes]
rs73987244	0.86[AFR][1000 genomes]
rs73987245	0.84[AFR][1000 genomes]
rs73987246	0.84[AFR][1000 genomes]
rs73987247	0.84[AFR][1000 genomes]
rs73987248	0.86[AFR][1000 genomes]
rs73987249	0.86[AFR][1000 genomes]
rs73987250	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213013000-213018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:213017000-213019200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links