Variant report
| Variant | rs59383771 |
|---|---|
| Chromosome Location | chr2:213004876-213004877 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16847732 | 0.80[AFR][1000 genomes] |
| rs16847762 | 1.00[AFR][1000 genomes] |
| rs16847776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16847781 | 0.98[AFR][1000 genomes] |
| rs16847782 | 0.98[AFR][1000 genomes] |
| rs16847786 | 0.81[AFR][1000 genomes] |
| rs55760492 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55960356 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56926019 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58176578 | 0.81[AFR][1000 genomes] |
| rs59942033 | 0.88[AFR][1000 genomes] |
| rs60944259 | 0.82[AFR][1000 genomes] |
| rs6737841 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987234 | 0.82[AFR][1000 genomes] |
| rs73987235 | 0.80[AFR][1000 genomes] |
| rs73987242 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987243 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987244 | 0.98[AFR][1000 genomes] |
| rs73987245 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987246 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987247 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987248 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987249 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73987250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:213001400-213009400 | Weak transcription | Fetal Heart | heart |
| 2 | chr2:213003400-213009400 | Weak transcription | Fetal Intestine Small | intestine |
