Variant report

Variant	rs16847752
Chromosome Location	chr2:212992909-212992910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13015590	0.88[YRI][hapmap]
rs16847650	0.89[YRI][hapmap]
rs16847653	0.89[YRI][hapmap]
rs16847657	0.89[YRI][hapmap]
rs16847714	1.00[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs16847732	1.00[ASW][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs16847762	1.00[ASW][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847767	1.00[YRI][hapmap]
rs16847769	1.00[YRI][hapmap]
rs16847773	1.00[YRI][hapmap]
rs16847776	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16847781	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847786	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs16847802	0.82[YRI][hapmap]
rs16847805	0.82[YRI][hapmap]
rs55760492	0.84[AFR][1000 genomes]
rs55960356	0.89[AFR][1000 genomes]
rs57682664	1.00[AMR][1000 genomes]
rs58176578	0.83[AFR][1000 genomes]
rs58959264	1.00[AMR][1000 genomes]
rs59383771	0.98[AFR][1000 genomes]
rs59942033	0.86[AFR][1000 genomes]
rs60944259	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077400	1.00[AMR][1000 genomes]
rs73079309	1.00[AMR][1000 genomes]
rs73079315	1.00[AMR][1000 genomes]
rs73079345	1.00[AMR][1000 genomes]
rs73079347	1.00[AMR][1000 genomes]
rs73987233	1.00[AMR][1000 genomes]
rs73987234	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987235	1.00[AMR][1000 genomes]
rs73987236	1.00[AMR][1000 genomes]
rs73987242	0.98[AFR][1000 genomes]
rs73987243	0.98[AFR][1000 genomes]
rs73987244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73987245	0.98[AFR][1000 genomes]
rs73987246	0.98[AFR][1000 genomes]
rs73987247	0.98[AFR][1000 genomes]
rs73987248	1.00[AFR][1000 genomes]
rs73987249	1.00[AFR][1000 genomes]
rs73987250	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875802	chr2:212867291-213004603	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875804	chr2:212891401-212997024	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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