Variant report
| Variant | rs16847657 |
|---|---|
| Chromosome Location | chr2:212944239-212944240 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs13015590 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847650 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847653 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847714 | 0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847732 | 0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16847752 | 0.89[YRI][hapmap] |
| rs16847762 | 0.89[YRI][hapmap] |
| rs16847767 | 0.89[YRI][hapmap] |
| rs16847769 | 0.89[YRI][hapmap] |
| rs16847773 | 0.89[YRI][hapmap] |
| rs16847776 | 0.89[YRI][hapmap] |
| rs16847781 | 1.00[YRI][hapmap] |
| rs57924179 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60944259 | 0.83[AFR][1000 genomes] |
| rs73987224 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987225 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987226 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987229 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987231 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73987234 | 0.83[AFR][1000 genomes] |
| rs73987235 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875798 | chr2:212852669-212961992 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875802 | chr2:212867291-213004603 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv875803 | chr2:212874828-212969560 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv875804 | chr2:212891401-212997024 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
