Variant report

Variant	rs73077741
Chromosome Location	chr3:56451352-56451353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55663125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770343	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55964515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101333	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73077719	0.81[AFR][1000 genomes]
rs73077738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077772	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077792	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56436600-56457400	Weak transcription	Pancreas	Pancrea
2	chr3:56445800-56461800	Weak transcription	Fetal Brain Female	brain
3	chr3:56447400-56469200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:56448400-56456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:56448400-56456400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:56448600-56456400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56448600-56456600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:56449000-56460400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:56450000-56467800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:56450000-56469800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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