Variant report

Variant	rs73077792
Chromosome Location	chr3:56492720-56492721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55663125	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55770343	0.90[ASN][1000 genomes]
rs55964515	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56101333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077719	0.81[AFR][1000 genomes]
rs73077738	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73077741	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73077772	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56492200-56493200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56492400-56493200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:56492400-56493200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56492400-56493400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:56492400-56493400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:56492400-56493800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:56492400-56494000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:56492400-56494200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:56492600-56493200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:56492600-56493200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:56492600-56493200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:56492600-56493400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:56492600-56493600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:56492600-56494000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:56492600-56494200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:56492600-56494200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:56492600-56494400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:56492600-56494400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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