Variant report

Variant	rs73078280
Chromosome Location	chr5:35637739-35637740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35631497..35633128-chr5:35637174..35638792,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238441	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59120803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60390801	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078242	1.00[AMR][1000 genomes]
rs73078248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078249	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078252	1.00[AMR][1000 genomes]
rs73078255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078261	1.00[AMR][1000 genomes]
rs73078266	1.00[AMR][1000 genomes]
rs73078269	1.00[AMR][1000 genomes]
rs73078283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080301	1.00[AMR][1000 genomes]
rs73082293	1.00[AMR][1000 genomes]
rs73082296	1.00[AMR][1000 genomes]
rs7716240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
2	chr5:35618600-35653800	Weak transcription	Lung	lung
3	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
4	chr5:35619000-35638000	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:35619000-35644200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:35619200-35639000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:35619200-35644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:35619200-35645800	Weak transcription	Small Intestine	intestine
12	chr5:35619200-35646000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
14	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:35625600-35650000	Weak transcription	Right Ventricle	heart
17	chr5:35627200-35656600	Weak transcription	Osteobl	bone
18	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
19	chr5:35630600-35642800	Weak transcription	Fetal Stomach	stomach
20	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
22	chr5:35632000-35643200	Weak transcription	Fetal Kidney	kidney
23	chr5:35632600-35639000	Weak transcription	Ovary	ovary
24	chr5:35632600-35644000	Weak transcription	Brain Angular Gyrus	brain
25	chr5:35632600-35652400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr5:35633400-35642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:35634800-35638200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr5:35634800-35644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:35634800-35644200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr5:35634800-35644600	Weak transcription	Fetal Lung	lung
31	chr5:35634800-35651200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:35634800-35651200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
36	chr5:35635000-35652000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr5:35635400-35640000	Weak transcription	Liver	Liver
38	chr5:35635400-35651000	Weak transcription	Dnd41	blood
39	chr5:35635600-35648800	Weak transcription	Gastric	stomach
40	chr5:35635600-35651200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
43	chr5:35635800-35639200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:35636000-35643600	Weak transcription	Fetal Intestine Large	intestine
46	chr5:35636000-35644600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:35636000-35649800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:35636600-35638000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:35636800-35640600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr5:35637200-35638600	Strong transcription	Primary T cells from cord blood	blood

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