Variant report

Variant	rs73078789
Chromosome Location	chr2:212474069-212474070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16846548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846550	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41382849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55651117	1.00[EUR][1000 genomes]
rs73076977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73076990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077001	1.00[EUR][1000 genomes]
rs73078720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078785	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078795	1.00[EUR][1000 genomes]
rs7559841	1.00[EUR][1000 genomes]
rs9677658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467200-212480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
3	chr2:212470400-212489600	Weak transcription	Fetal Heart	heart
4	chr2:212473400-212474600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:212473600-212474400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:212473600-212474400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:212473600-212474800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:212473600-212476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:212473800-212474200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:212473800-212474200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:212473800-212474400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:212473800-212474600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:212473800-212474600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:212473800-212474800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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