Variant report

Variant	rs9677658
Chromosome Location	chr2:212469949-212469950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16846548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41382849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55651117	1.00[EUR][1000 genomes]
rs73076977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73076990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077001	1.00[EUR][1000 genomes]
rs73078720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73078795	1.00[EUR][1000 genomes]
rs7559841	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212456600-212473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212467200-212480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
4	chr2:212469000-212470400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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