Variant report

Variant	rs73080223
Chromosome Location	chr5:35653718-35653719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73080213	1.00[AFR][1000 genomes]
rs73080232	1.00[AFR][1000 genomes]
rs73080270	1.00[AFR][1000 genomes]
rs73080280	1.00[AFR][1000 genomes]
rs73080281	1.00[AFR][1000 genomes]
rs73080283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35653800	Weak transcription	Lung	lung
2	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
3	chr5:35627200-35656600	Weak transcription	Osteobl	bone
4	chr5:35630400-35662400	Weak transcription	Aorta	Aorta
5	chr5:35630600-35663400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
7	chr5:35634800-35658200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:35634800-35658200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
10	chr5:35635600-35660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:35635600-35665400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:35635800-35664000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:35639000-35655600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:35639400-35664600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:35640600-35664000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:35644000-35654400	Weak transcription	Fetal Intestine Large	intestine
18	chr5:35645200-35662200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:35645200-35663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
21	chr5:35648200-35663400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:35651200-35673000	Weak transcription	Ovary	ovary
23	chr5:35651600-35658200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:35651600-35664600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:35651800-35663400	Weak transcription	Dnd41	blood
26	chr5:35652000-35665000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:35653400-35653800	Enhancers	HUVEC	blood vessel

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