Variant report

Variant	rs73080281
Chromosome Location	chr5:35672747-35672748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73080213	1.00[AFR][1000 genomes]
rs73080223	1.00[AFR][1000 genomes]
rs73080232	1.00[AFR][1000 genomes]
rs73080270	1.00[AFR][1000 genomes]
rs73080280	1.00[AFR][1000 genomes]
rs73080283	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
2	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
3	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
6	chr5:35651200-35673000	Weak transcription	Ovary	ovary
7	chr5:35657400-35673000	Weak transcription	Fetal Heart	heart
8	chr5:35665600-35677800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:35668600-35675000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:35668600-35675800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:35669000-35675000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:35669200-35674800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35669200-35675000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr5:35670000-35673200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:35670000-35673200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:35670200-35674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:35670200-35675000	Enhancers	Dnd41	blood
18	chr5:35670400-35678800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:35671000-35674600	Enhancers	Primary hematopoietic stem cells	blood
20	chr5:35671400-35673200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:35671600-35673800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:35671800-35673000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:35672000-35673000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:35672000-35673200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr5:35672000-35675000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr5:35672000-35708600	Weak transcription	Gastric	stomach
27	chr5:35672200-35673000	Enhancers	Primary T cells from cord blood	blood
28	chr5:35672200-35673200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr5:35672200-35674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:35672600-35674200	Enhancers	Pancreatic Islets	Pancreatic Islet

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