Variant report

Variant	rs73081060
Chromosome Location	chr7:19703697-19703698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2191937	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56089097	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56104650	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454500	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454501	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454508	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454509	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1020275	chr7:19677535-19730557	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19703200-19704000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:19703200-19704000	Enhancers	NHEK	skin
3	chr7:19703400-19704000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:19703600-19703800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:19703600-19703800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr7:19703600-19704000	Active TSS	HMEC	breast
7	chr7:19703600-19704600	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:19703600-19704600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:19703600-19704600	Enhancers	GM12878-XiMat	blood
10	chr7:19703600-19705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:19703600-19705200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:19703600-19705200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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