Variant report

Variant	rs7308237
Chromosome Location	chr12:25310128-25310129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56031509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56156532	1.00[EUR][1000 genomes]
rs56225858	1.00[EUR][1000 genomes]
rs61761089	1.00[AMR][1000 genomes]
rs61762415	1.00[EUR][1000 genomes]
rs61762420	1.00[EUR][1000 genomes]
rs61764372	1.00[EUR][1000 genomes]
rs73067299	1.00[EUR][1000 genomes]
rs73069109	1.00[EUR][1000 genomes]
rs73069133	1.00[EUR][1000 genomes]
rs73069144	1.00[EUR][1000 genomes]
rs73071282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071287	1.00[EUR][1000 genomes]
rs73071293	1.00[EUR][1000 genomes]
rs73071296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071297	1.00[EUR][1000 genomes]
rs73071298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071299	1.00[EUR][1000 genomes]
rs73081232	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73081719	1.00[EUR][1000 genomes]
rs73081729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv515612	chr12:25272027-25341177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv557797	chr12:25272027-25341177	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv898922	chr12:25274593-25408047	Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25304600-25315600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:25307200-25311600	Enhancers	Primary B cells from cord blood	blood
3	chr12:25307200-25312200	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:25309600-25310800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:25309800-25310800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:25310000-25310400	Weak transcription	Monocytes-CD14+_RO01746	blood

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