Variant report

Variant	rs73085598
Chromosome Location	chr5:56961222-56961223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73089830	1.00[AMR][1000 genomes]
rs73089839	1.00[AMR][1000 genomes]
rs73089871	1.00[AMR][1000 genomes]
rs73091875	1.00[AMR][1000 genomes]
rs73091888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830309	chr5:56837590-56978283	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:56957400-56964200	Enhancers	Fetal Heart	heart
2	chr5:56959400-56961400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:56959400-56961800	Weak transcription	Right Ventricle	heart
4	chr5:56959600-56961800	Weak transcription	Ovary	ovary
5	chr5:56960000-56963800	Weak transcription	Right Atrium	heart
6	chr5:56960600-56961600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:56960600-56966000	Strong transcription	Liver	Liver
8	chr5:56960800-56962000	Enhancers	Left Ventricle	heart
9	chr5:56960800-56962000	Enhancers	Pancreas	Pancrea
10	chr5:56960800-56962200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:56960800-56963000	Enhancers	NHEK	skin
12	chr5:56961200-56961600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:56961200-56962400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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