Variant report

Variant	rs73091875
Chromosome Location	chr5:57128295-57128296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12657521	0.84[AFR][1000 genomes]
rs12657522	0.89[AFR][1000 genomes]
rs73085598	1.00[AMR][1000 genomes]
rs73089830	1.00[AMR][1000 genomes]
rs73089839	1.00[AMR][1000 genomes]
rs73089871	1.00[AMR][1000 genomes]
rs73091888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093723	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57121400-57132800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:57121600-57128800	Weak transcription	NHLF	lung
3	chr5:57121800-57129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:57125400-57128800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:57127200-57129600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57127400-57129800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:57127400-57129800	Enhancers	HMEC	breast
8	chr5:57127400-57137400	Enhancers	NHEK	skin
9	chr5:57128000-57129200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:57128000-57129800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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