Variant report

Variant	rs73086924
Chromosome Location	chr3:56027916-56027917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12631548	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458061	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17056288	0.83[EUR][1000 genomes]
rs17216524	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17825124	0.91[EUR][1000 genomes]
rs4974160	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57141558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6779691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6797314	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56021400-56028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56021400-56034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56022600-56028200	Weak transcription	Fetal Kidney	kidney
4	chr3:56023400-56032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:56023600-56028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:56023600-56028200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56023600-56034600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:56023800-56028000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:56023800-56032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:56025000-56029800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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