Variant report

Variant	rs17056288
Chromosome Location	chr3:55993951-55993952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1110225	0.91[ASN][1000 genomes]
rs11715867	0.99[ASN][1000 genomes]
rs11917617	0.93[ASN][1000 genomes]
rs12631548	0.87[EUR][1000 genomes]
rs1350411	0.91[ASN][1000 genomes]
rs1379725	0.93[ASN][1000 genomes]
rs1458060	0.85[EUR][1000 genomes]
rs1458061	0.87[EUR][1000 genomes]
rs17216524	0.85[EUR][1000 genomes]
rs17825124	0.84[EUR][1000 genomes]
rs57141558	0.87[EUR][1000 genomes]
rs66465679	0.91[ASN][1000 genomes]
rs6779691	0.87[EUR][1000 genomes]
rs67843876	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6797314	0.87[EUR][1000 genomes]
rs724333	0.93[ASN][1000 genomes]
rs73075389	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73086924	0.83[EUR][1000 genomes]
rs7621837	0.85[ASN][1000 genomes]
rs897967	0.99[ASN][1000 genomes]
rs9311591	0.98[ASN][1000 genomes]
rs9817480	0.81[ASN][1000 genomes]
rs9822856	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv999867	chr3:55953433-56000627	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55992400-55994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:55992600-55994400	Enhancers	Ovary	ovary
3	chr3:55992800-55994200	Enhancers	Fetal Lung	lung
4	chr3:55993000-56009600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:55993800-55994000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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