Variant report

Variant	rs66465679
Chromosome Location	chr3:55943930-55943931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1110225	0.98[ASN][1000 genomes]
rs11715867	0.90[ASN][1000 genomes]
rs11917617	0.96[ASN][1000 genomes]
rs1350411	0.92[ASN][1000 genomes]
rs1379725	0.96[ASN][1000 genomes]
rs17056288	0.91[ASN][1000 genomes]
rs4111	0.96[EUR][1000 genomes]
rs67843876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs724333	0.96[ASN][1000 genomes]
rs73075389	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7621837	0.94[ASN][1000 genomes]
rs897967	0.90[ASN][1000 genomes]
rs9311591	0.89[ASN][1000 genomes]
rs9822856	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55936600-55944000	Enhancers	Fetal Heart	heart
2	chr3:55941400-55944800	Weak transcription	Hela-S3	cervix
3	chr3:55943800-55945800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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