Variant report

Variant	rs897967
Chromosome Location	chr3:55993528-55993529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1110225	0.92[ASN][1000 genomes]
rs11715867	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917617	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1350411	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1379725	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17056288	0.99[ASN][1000 genomes]
rs66465679	0.90[ASN][1000 genomes]
rs67843876	0.93[ASN][1000 genomes]
rs724333	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73075389	0.84[ASN][1000 genomes]
rs7621837	0.86[ASN][1000 genomes]
rs9311591	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817480	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9822856	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv999867	chr3:55953433-56000627	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55992400-55994000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:55992600-55994400	Enhancers	Ovary	ovary
3	chr3:55992800-55994200	Enhancers	Fetal Lung	lung
4	chr3:55993000-56009600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:55993200-55993800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:55993200-55993800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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