Variant report

Variant	rs67843876
Chromosome Location	chr3:55951160-55951161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1110225	0.98[ASN][1000 genomes]
rs11715867	0.93[ASN][1000 genomes]
rs11917617	0.99[ASN][1000 genomes]
rs1350411	0.95[ASN][1000 genomes]
rs1379725	0.99[ASN][1000 genomes]
rs17056288	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4111	0.98[EUR][1000 genomes]
rs66465679	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs724333	0.99[ASN][1000 genomes]
rs73075389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7621837	0.91[ASN][1000 genomes]
rs897967	0.93[ASN][1000 genomes]
rs9311591	0.92[ASN][1000 genomes]
rs9822856	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55949000-55958600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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