Variant report

Variant	rs73087762
Chromosome Location	chr3:53177276-53177277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53176620..53178879-chr3:53179713..53181872,2	MCF-7	breast:
2	chr3:53171440..53173216-chr3:53176278..53178041,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55685362	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254272	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254273	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254274	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62254276	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254277	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254278	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254279	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62254280	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6777221	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460553	chr3:53147576-53185061	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv590357	chr3:53147576-53185061	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv834699	chr3:53151876-53325808	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv517233	chr3:53175557-53321002	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53165600-53177800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:53165600-53181400	Weak transcription	Spleen	Spleen
3	chr3:53169200-53179000	Weak transcription	Fetal Lung	lung
4	chr3:53169200-53183800	Weak transcription	Right Ventricle	heart
5	chr3:53173200-53178000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:53174000-53182400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:53174400-53178000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:53174600-53178400	Enhancers	Primary B cells from cord blood	blood
9	chr3:53174800-53189600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:53175000-53178000	Weak transcription	Gastric	stomach
11	chr3:53175000-53183800	Weak transcription	Esophagus	oesophagus
12	chr3:53175200-53177400	Bivalent Enhancer	HepG2	liver
13	chr3:53175200-53183800	Weak transcription	Right Atrium	heart
14	chr3:53175400-53177800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:53175400-53183600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:53175600-53178000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:53175600-53178600	Weak transcription	Lung	lung
18	chr3:53175600-53179200	Weak transcription	Hela-S3	cervix
19	chr3:53175600-53180600	Weak transcription	Adipose Nuclei	Adipose
20	chr3:53175600-53184000	Weak transcription	NHDF-Ad	bronchial
21	chr3:53175800-53180600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:53175800-53183800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:53176400-53178000	Enhancers	Primary hematopoietic stem cells	blood
24	chr3:53176400-53178000	Enhancers	GM12878-XiMat	blood
25	chr3:53176400-53188000	Enhancers	Stomach Mucosa	stomach
26	chr3:53176600-53178000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr3:53176600-53178600	Weak transcription	Colonic Mucosa	Colon
28	chr3:53176600-53180800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:53176800-53177400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:53176800-53177600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:53177000-53179000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:53177000-53180200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:53177200-53177400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:53177200-53178200	Enhancers	Placenta	Placenta
35	chr3:53177200-53181600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:53177200-53182400	Enhancers	Pancreas	Pancrea

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