Variant report

Variant	rs73089413
Chromosome Location	chr5:36659581-36659582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61130125	1.00[AMR][1000 genomes]
rs6887511	1.00[AMR][1000 genomes]
rs73089416	1.00[AMR][1000 genomes]
rs73091691	1.00[AMR][1000 genomes]
rs73093808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv969921	chr5:36645147-36696229	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36651400-36662400	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr5:36652400-36662400	Enhancers	Brain Substantia Nigra	brain
3	chr5:36652600-36661200	Enhancers	Fetal Lung	lung
4	chr5:36653200-36660800	Enhancers	Fetal Heart	heart
5	chr5:36654600-36659800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:36654800-36660800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:36655000-36661800	Enhancers	Brain Cingulate Gyrus	brain
8	chr5:36655000-36667200	Weak transcription	Fetal Kidney	kidney
9	chr5:36655000-36667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:36655400-36660600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:36655400-36661200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:36655400-36662200	Enhancers	Brain Anterior Caudate	brain
13	chr5:36655400-36684200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:36655400-36690000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:36655600-36667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:36655800-36661400	Enhancers	HMEC	breast
17	chr5:36655800-36662000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:36655800-36671200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:36655800-36671400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:36656000-36670800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:36656000-36673800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:36656600-36670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:36657200-36659600	Enhancers	Primary hematopoietic stem cells	blood
24	chr5:36657800-36659800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:36658000-36659800	Enhancers	Left Ventricle	heart
26	chr5:36658000-36659800	Enhancers	Right Atrium	heart
27	chr5:36658000-36661800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:36658000-36661800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:36658000-36663000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr5:36658200-36660200	Weak transcription	Fetal Intestine Large	intestine
31	chr5:36658200-36660600	Enhancers	Brain Angular Gyrus	brain
32	chr5:36658200-36660800	Weak transcription	Fetal Intestine Small	intestine
33	chr5:36658200-36662200	Weak transcription	Fetal Brain Male	brain
34	chr5:36658200-36662800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:36658200-36690000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr5:36658400-36659600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:36658400-36660800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:36658400-36665000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:36658600-36659800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:36658600-36659800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:36658600-36660200	Enhancers	Hela-S3	cervix
42	chr5:36658600-36660600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:36658600-36660800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:36658600-36661000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:36658600-36661200	Enhancers	NHEK	skin
46	chr5:36658600-36661800	Weak transcription	Brain Germinal Matrix	brain
47	chr5:36658600-36662600	Weak transcription	Fetal Brain Female	brain
48	chr5:36658600-36665000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:36658600-36667400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr5:36658600-36670800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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