Variant report
| Variant | rs61130125 |
|---|---|
| Chromosome Location | chr5:36861431-36861432 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000164190 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs58498167 | 1.00[AMR][1000 genomes] |
| rs60290055 | 1.00[AMR][1000 genomes] |
| rs60570427 | 1.00[AMR][1000 genomes] |
| rs61005381 | 1.00[AMR][1000 genomes] |
| rs6863554 | 1.00[AMR][1000 genomes] |
| rs6887511 | 1.00[AMR][1000 genomes] |
| rs73089413 | 1.00[AMR][1000 genomes] |
| rs73089416 | 1.00[AMR][1000 genomes] |
| rs73091691 | 1.00[AMR][1000 genomes] |
| rs73093808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73093847 | 1.00[AMR][1000 genomes] |
| rs73093898 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492319 | chr5:36570707-37061019 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv525478 | chr5:36804225-37349895 | Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 3 | nsv532133 | chr5:36834932-36906436 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
