Variant report

Variant	rs58498167
Chromosome Location	chr5:36906433-36906434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36906209..36908902-chr5:36936450..36938338,2	K562	blood:
2	chr5:36899113..36901720-chr5:36902343..36906558,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56725398	1.00[AMR][1000 genomes]
rs58089157	1.00[AMR][1000 genomes]
rs58132646	1.00[AMR][1000 genomes]
rs60290055	1.00[AMR][1000 genomes]
rs60570427	1.00[AMR][1000 genomes]
rs61005381	1.00[AMR][1000 genomes]
rs61062002	1.00[AMR][1000 genomes]
rs61130125	1.00[AMR][1000 genomes]
rs6863554	1.00[AMR][1000 genomes]
rs6887511	1.00[AMR][1000 genomes]
rs73091691	1.00[AMR][1000 genomes]
rs73093808	1.00[AMR][1000 genomes]
rs73093847	1.00[AMR][1000 genomes]
rs73093898	1.00[AMR][1000 genomes]
rs73095712	1.00[AMR][1000 genomes]
rs73095713	1.00[AMR][1000 genomes]
rs73095726	1.00[AMR][1000 genomes]
rs73095728	1.00[AMR][1000 genomes]
rs73095735	1.00[AMR][1000 genomes]
rs7704088	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36886600-36909200	Weak transcription	Left Ventricle	heart
2	chr5:36886600-36910400	Weak transcription	Ovary	ovary
3	chr5:36888200-36910400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:36888800-36911000	Weak transcription	Fetal Lung	lung
5	chr5:36895800-36918800	Weak transcription	Small Intestine	intestine
6	chr5:36895800-36928600	Weak transcription	HSMM	muscle
7	chr5:36896200-36908000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:36898000-36907200	Weak transcription	Stomach Mucosa	stomach
9	chr5:36899000-36926400	Weak transcription	Gastric	stomach
10	chr5:36900200-36908400	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:36901000-36908800	Weak transcription	Fetal Heart	heart
12	chr5:36902000-36911400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr5:36902600-36912800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:36902800-36908200	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:36902800-36912600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:36903600-36908400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:36903800-36919200	Weak transcription	K562	blood
18	chr5:36904200-36914600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:36905000-36907000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:36905000-36909800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:36905000-36919400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:36905200-36906800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:36905200-36907000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:36905200-36907800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:36905200-36908200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:36905200-36908800	Weak transcription	Right Ventricle	heart
27	chr5:36905200-36908800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:36905200-36914200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr5:36905200-36914200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:36905200-36914400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:36905200-36920000	Weak transcription	Primary B cells from cord blood	blood
32	chr5:36905200-36927800	Weak transcription	Psoas Muscle	Psoas
33	chr5:36905400-36907000	Weak transcription	Primary T cells from cord blood	blood
34	chr5:36905600-36906600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:36905600-36906800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr5:36905600-36906800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:36905600-36907000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:36905600-36908000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr5:36906200-36909600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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