Variant report

Variant	rs73090573
Chromosome Location	chr3:56401446-56401447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17056721	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056727	0.93[ASN][1000 genomes]
rs2034625	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55703247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839257	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56177242	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152327	0.87[ASN][1000 genomes]
rs59002596	0.93[ASN][1000 genomes]
rs6445782	0.81[ASN][1000 genomes]
rs6780890	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73073991	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73073994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73088533	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088551	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73090532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832601	0.93[ASN][1000 genomes]
rs73832717	0.87[ASN][1000 genomes]
rs73835005	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56390600-56406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:56399000-56402400	Enhancers	HSMMtube	muscle
4	chr3:56399800-56401600	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:56400000-56401800	Enhancers	Fetal Heart	heart
6	chr3:56400200-56402000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:56400400-56401600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:56400400-56401800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:56400400-56405000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:56400600-56401800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:56400600-56405000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:56400800-56401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:56400800-56402600	Weak transcription	Adipose Nuclei	Adipose
14	chr3:56400800-56407200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:56401000-56402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:56401000-56405200	Weak transcription	Brain Anterior Caudate	brain
17	chr3:56401200-56402600	Weak transcription	Brain Angular Gyrus	brain
18	chr3:56401200-56402600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:56401200-56407000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:56401400-56401600	Enhancers	Right Atrium	heart
21	chr3:56401400-56402600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:56401400-56402600	Weak transcription	Brain Substantia Nigra	brain

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